{
  "@context": "https://schema.org",
  "@type": "Dataset",
  "name": "Application Deployment Metadata",
  "description": "Structured metadata for applications, users, and projects deployed on the SciLifeLab Serve platform (https://serve.scilifelab.se/).",
  "dateCreated": "2026-08-18T20:06:15.784733+00:00",
  "creator": {
    "@type": "Organization",
    "name": "SciLifeLab Data Centre",
    "url": "https://www.scilifelab.se/data"
  },
  "hasPart": [
    {
      "@type": "SoftwareApplication",
      "name": "Breast Cancer_PREDIX_LumB",
      "description": "Needle biopsies from patients with ER+/HER2- invasive breast cancer who received 12 weeks of neoadjuvant treatment with the CDK4/6 inhibitor palbociclib in combination with endocrine therapy. Paired biopsies were collected at baseline (treatment-naive) and on-treatment (after 12 weeks). Objective response rates (ORR) were evaluated at 12 weeks, classifying patients into responders (R) and non-responders (NR). None of the patients achieved a pathological complete response at 12 weeks.\r\n\r\nOrder of samples\r\nFirst row: Non-Responder 1 Baseline,  Non-Responder 1 Visit, Non-Responder 2 Baseline,  Non-Responder 2 Visit\r\nSecond row:  Non-Responder 3 Baseline,  Non-Responder 3 Visit, Responder 1 Baseline,  Responder 1 Visit\r\nThird row: Responder 2 Baseline,  Responder 2 Visit, Responder 3 Baseline,  Responder 3 Visit",
      "url": "https://r0928505c.serve.scilifelab.se",
      "softwareVersion": "ghcr.io/scilifelabdatacentre/serve-charts/tissuumaps:1.0.8",
      "author": {
        "@type": "Person",
        "name": "Anastasia Magoulopoulou",
        "email": "anastasia.magoulopoulou@dbb.su.se",
        "affiliations": [
          {
            "@type": "Organization",
            "name": "Stockholm University",
            "department": "Department of Biochemistry and Biophysics",
            "identifier": "https://ror.org/05f0yaq80"
          }
        ]
      },
      "applicationCategory": "Cloud Application",
      "operatingSystem": "Kubernetes",
      "additionalProperty": [
        {
          "@type": "PropertyValue",
          "name": "appImage",
          "value": ""
        },
        {
          "@type": "PropertyValue",
          "name": "appCreated",
          "value": "2026-02-17T13:25:05.663380+00:00"
        },
        {
          "@type": "PropertyValue",
          "name": "appUpdated",
          "value": "2026-08-18T11:59:04.801035+00:00"
        },
        {
          "@type": "PropertyValue",
          "name": "cpuRequest",
          "value": "100m"
        },
        {
          "@type": "PropertyValue",
          "name": "cpuLimit",
          "value": "2000m"
        },
        {
          "@type": "PropertyValue",
          "name": "memoryRequest",
          "value": "1Gi"
        },
        {
          "@type": "PropertyValue",
          "name": "memoryLimit",
          "value": "4Gi"
        },
        {
          "@type": "PropertyValue",
          "name": "storageRequest",
          "value": "100Mi"
        },
        {
          "@type": "PropertyValue",
          "name": "storageLimit",
          "value": "5000Mi"
        }
      ],
      "hasPart": {
        "@type": "SoftwareSourceCode"
      }
    }
  ],
  "about": {
    "@type": "Project",
    "name": "Breast Cancer_PREDIX_LumB",
    "description": "Biopsies from patients diagnosed with ER+/HER2- invasive breast cancer who received 12 weeks of neoadjuvant treatment with the CDK4/6 inhibitor palbociclib in combination with endocrine therapy. Paired biopsies were collected at baseline (treatment-naive) and on-treatment (after 12 weeks). Objective response rates (ORR) were evaluated at 12 weeks, classifying patients into responders (R) and non-responders (NR). None of the patients achieved a pathological complete response at 12 weeks.\r\n\r\nOrder of samples\r\nFirst row: Non-Responder 1 Baseline,  Non-Responder 1 Visit, Non-Responder 2 Baseline,  Non-Responder 2 Visit\r\nSecond row:  Non-Responder 3 Baseline,  Non-Responder 3 Visit, Responder 1 Baseline,  Responder 1 Visit\r\nThird row: Responder 2 Baseline,  Responder 2 Visit, Responder 3 Baseline,  Responder 3 Visit",
    "additionalProperty": [
      {
        "@type": "PropertyValue",
        "name": "dateCreated",
        "value": "2026-02-17T13:22:26.365132+00:00"
      },
      {
        "@type": "PropertyValue",
        "name": "minio",
        "value": "1"
      },
      {
        "@type": "PropertyValue",
        "name": "mlflow",
        "value": "1"
      },
      {
        "@type": "PropertyValue",
        "name": "vscode",
        "value": "3"
      },
      {
        "@type": "PropertyValue",
        "name": "dashapp",
        "value": "10"
      },
      {
        "@type": "PropertyValue",
        "name": "mongodb",
        "value": "0"
      },
      {
        "@type": "PropertyValue",
        "name": "reducer",
        "value": "0"
      },
      {
        "@type": "PropertyValue",
        "name": "rstudio",
        "value": "3"
      },
      {
        "@type": "PropertyValue",
        "name": "combiner",
        "value": "0"
      },
      {
        "@type": "PropertyValue",
        "name": "depictio",
        "value": "1"
      },
      {
        "@type": "PropertyValue",
        "name": "shinyapp",
        "value": "10"
      },
      {
        "@type": "PropertyValue",
        "name": "customapp",
        "value": "10"
      },
      {
        "@type": "PropertyValue",
        "name": "netpolicy",
        "value": "0"
      },
      {
        "@type": "PropertyValue",
        "name": "volumeK8s",
        "value": "0"
      },
      {
        "@type": "PropertyValue",
        "name": "tissuumaps",
        "value": "1"
      },
      {
        "@type": "PropertyValue",
        "name": "filemanager",
        "value": "1"
      },
      {
        "@type": "PropertyValue",
        "name": "jupyter-lab",
        "value": "3"
      },
      {
        "@type": "PropertyValue",
        "name": "mlflow-serve",
        "value": "10"
      },
      {
        "@type": "PropertyValue",
        "name": "python-serve",
        "value": "10"
      },
      {
        "@type": "PropertyValue",
        "name": "mongo-express",
        "value": "0"
      },
      {
        "@type": "PropertyValue",
        "name": "pytorch-serve",
        "value": "10"
      },
      {
        "@type": "PropertyValue",
        "name": "shinyproxyapp",
        "value": "10"
      },
      {
        "@type": "PropertyValue",
        "name": "tensorflow-serve",
        "value": "10"
      }
    ],
    "funder": {
      "@type": "Person",
      "name": "Anastasia Magoulopoulou",
      "email": "anastasia.magoulopoulou@dbb.su.se"
    },
    "parentOrganization": {
      "@type": "Organization",
      "name": "Stockholm University",
      "additionalProperty": {
        "@type": "PropertyValue",
        "name": "department",
        "value": "Department of Biochemistry and Biophysics"
      }
    }
  }
}