5PSeq Explorer

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Title: 5PSeq Explorer
DOI: https://doi.org/10.82595/scilifelab.0s6nm-0af72
Description: 5PSeq is a method for profiling 5' phosphorylated mRNA undergoing decay. Degradation coincides with translation, as the enzymatic cleavage of the 5' end of mRNAs occurs right behind the last trailing ribosome. Therefore, information about ribosome dynamics can be obtained by profiling the degradome (5PSeq). 5PSeq Explorer is a web application that allows the visualisation of preprocessed co-translational degradation intermediates datasets in bacteria, Saccharomyces and Candida albicans in response to various stresses and drug treatments. Information about frame usage, translation start and termination sites, amino acid and codon usage is available.
URL: https://fivepseq-explorer.serve.scilifelab.se
Source code: https://github.com/irenestevens8/5Pseq-Explorer
Docker image: stevensirene/fivepseq-explorer:v1.7
Date submitted: 2025-10-19 17:47
Date updated: 2026-08-31 22:39

Stevens, Irene

Version 1:
https://doi.org/10.82595/scilifelab.0s6nm-0af72 current

To cite all versions, use the following DOI:
https://doi.org/10.82595/scilifelab.7f16r-xx607