HistoSeg → SpatioPath

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Title: HistoSeg → SpatioPath
DOI: https://doi.org/10.82595/scilifelab.e6940-1fs17
Description: Directional signed spatial association analysis of HistoSeg structures and cell groups. Upload one HistoSeg output ZIP to calculate ASI, signed association distance (negative inside, positive outside), analytical p-values, BH-FDR q-values, and inside/outside level-set diagnostics for every structure–cell-group pair.
Subjects and keywords: Spatial Transcriptomics
Pathology
Tumor Microenvironment
URL: https://histoseg-spatiopath.serve.scilifelab.se
Source code: https://github.com/longmp1992/histoseg-spatiopath-serve
Docker image: ghcr.io/longmp1992/histoseg-spatiopath-serve:sha-eb4309c9fff02064eb569a79b3ee48da8f1bbd96
Date submitted: 2026-08-28 11:04
Date updated: 2026-09-30 16:59
Date available: 2026-09-30 16:59
Language: English

Journal article: 10.1038/s41467-025-57943-y

Long, Mengping

Version 1:
https://doi.org/10.82595/scilifelab.e6940-1fs17 current

To cite all versions, use the following DOI:
https://doi.org/10.82595/scilifelab.ryywf-qq426