FieldScribe: Field sample metadata, made easy

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Record description

Title: FieldScribe: Field sample metadata, made easy
DOI: https://doi.org/10.82595/scilifelab.nvjed-dy092
Description: FieldScribe is a mobile-first, offline-capable web app for capturing biological and environmental sample metadata in the field and exporting it in the format each downstream database expects. It offers two workflows: specimen sampling for organisms, exporting to the ERGA / DToL and BGE PopGenomics sample manifests and the BOLD / iBOL barcoding template (as CSV and Excel; ready for brokering via COPO); and an eDNA / environmental workflow covering ten ENA GSC MIxS checklists and exporting an ENA-ready TSV. The app shows only the fields relevant to the task, works with no connection once loaded, and stores data on the user's own device with one-tap backup and export. It is a single self-contained page with no backend or login, built for the SciLifeLab Planetary Biology Strategic Area (Uppsala University) in collaboration with ERGA and BGE/BGE+. FieldScribe is an evolving open prototype; feedback and bug reports are welcome via its GitHub repository.
Subjects and keywords: Biodiversity
Genomics
Metagenomics
environmental data
DNA Barcoding, Taxonomic
Environmental Monitoring
sampling
Metadata
URL: https://fieldscribe.serve.scilifelab.se
Source code: https://github.com/OlgaVP-PB/FieldScribe
Docker image: ghcr.io/olgavp-pb/fieldscribe:20260903-123600
Date submitted: 2026-09-03 12:59
Date updated: 2026-09-03 12:59
Date available: 2026-09-03 12:59
Language: English
Funding: European Commission (BIODIVERSITY GENOMICS EUROPE)

Creators

Vinnere Pettersson, Olga

Versions

Version 1:
https://doi.org/10.82595/scilifelab.nvjed-dy092 current

To cite all versions, use the following DOI:
https://doi.org/10.82595/scilifelab.jn54y-gez42

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