de-etiolation_transcript_level

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Title: de-etiolation_transcript_level
DOI: https://doi.org/10.82595/scilifelab.z7gtw-j3v29
Description: The objective of this web app is to allow querying of transcript expression profiles during de-etiolation in wild-type plants and gun-1 mutant plants. This web app visualizes reanalyzed RNA-Seq data, aligned with Salmon (Patro et al., 2017) to the Arabidopsis AtRTD2 transcriptome (Zhang et al., 2017.) Reference: GENOMES UNCOUPLED1 plays a key role during the de-etiolation process in Arabidopsis Tamara Hernández-Verdeja, Linda Vuorijoki, Xu Jin, Alexander Vergara, Carole Dubreuil, Åsa Strand New Phytologist (2022), 235, Issue 1
Subjects and keywords: Etiolation
Protein Isoforms
RNA Splicing
Transcriptome
URL: https://deetiolation-transcripts.serve.scilifelab.se
Source code: https://github.com/avergro?tab=repositories
Docker image: docker.io/avergararobles/gun1_transcripts:gun1_transcripts
Date submitted: 2025-01-08 16:09
Date updated: 2026-11-12 02:17
Date available: 2026-11-12 02:17
Language: English

Creators

Vergara, Alexander

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Version 1:
https://doi.org/10.82595/scilifelab.z7gtw-j3v29 current

To cite all versions, use the following DOI:
https://doi.org/10.82595/scilifelab.899ba-6eb40

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