Public apps

22

IFNB scRNA-Seq

Shiny App

IFNB single-cell transcriptomics data

PK Predictor

PK Predictor is an open-source app framework built specifically for predicting human and animal PK parameters

igraph_3D

Shiny App

3D igraph from tsne with variable genes (Data from Tiklova et al. 2016)

Natural Nations

Shiny App

CitizenScience Project

RNA-Seq power

Shiny App

Power Analysis for RNA-Seq

Gutsy Atlas

Shiny App

Companion resource to the article, 'An online atlas of human plasma metabolite signatures of gut microbiome composition' by Dekkers et al

ADHD medication among 0-19 year olds in Sweden

Shiny App

Dashboard plotting the number of people in Sweden aged 0-19 who have have filled a prescription for ADHD medication each year.

Boreal Rhizospheric Atlas

Shiny App

The Boreal Rhizospheric Atlas online tool was created to encourage exploration of a metatranscriptomic dataset of Norway spruce fine roots and their associated fungal communities from nutrient limited and nutrient enriched forest plots of the boreal region of Northern Sweden.

Adipose Tissue Gene Expression Visualization

Shiny App

Supplemental interactive visualization of Adipose Tissue Gene expression after exercise. Built using flexdashboard

predguimm

PredGUI MM

Application allow you to get predictive data about compound (Multiple Molecule)

predgui

PredGUI

Application allow you to get predictive data about compound (Single Molecule)

Mouse metabolite atlas

Shiny App

The Mouse Organ Metabolite Atlas

Lab templates

Shiny App

App for accnr generation

MetaMEx

Shiny App

Meta-analysis of skeletal muscle response to exercise and inactivity

PeetraMagnusson2022-2

PyTorch Serve

UNet model with resnet-50 backbone trained to segment cerebellum in single channel DAPI images

Acute Myeloid Leukemia API

Tensorflow Serving

Slimmed down version of the model developed for the Acute Myeloid Leukemia (AML) classification problem by Matek, C., Schwarz, S., Marr, C., & Spiekermann, K. (2019) https://doi.org/10.7937/tcia.2019.36f5o9ld.

LTS project

Shiny App

scRNA-seq data in: Small molecule screen identifies a salt-inducible kinase inhibitor inducing β-cell proliferation by transiently activating the unfolded protein response

COVID-19 in Sweden

Dash App

This dashboard visualises the spread of COVID-19 in Sweden: confirmed cases, ICU admissions, deaths over time.

OmicLoupe

Shiny App

OmicLoupe server. See https://quantitativeproteomics.org/omicloupe/ for info about OmicLoupe.

NHP Shiny

Shiny App

Single cell RNA sequencing dataset associated with the manuscript "Amnion signals are essential for mesoderm formation in primates"

Cell Chat

Shiny App

CellChat's Shiny app which allows interactive exploration of the cell-cell communication that are analyzed by the CellChat R-package

NBIS Support 4884

Shiny App

Byrnes, Lauren E., et al. Lineage dynamics of murine pancreatic development at single-cell resolution

Public apps

22

IFNB scRNA-Seq

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PK Predictor

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igraph_3D

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Natural Nations

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RNA-Seq power

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Gutsy Atlas

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ADHD medication among 0-19 year olds in Sweden

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Boreal Rhizospheric Atlas

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Adipose Tissue Gene Expression Visualization

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predguimm

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predgui

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Mouse metabolite atlas

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Lab templates

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MetaMEx

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PeetraMagnusson2022-2

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Acute Myeloid Leukemia API

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LTS project

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COVID-19 in Sweden

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OmicLoupe

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NHP Shiny

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Cell Chat

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NBIS Support 4884

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