Public apps

22

COVID-19 in Sweden

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Dash App
This dashboard visualises the spread of COVID-19 in Sweden: confirmed cases, ICU admissions, deaths over time.

pophelperShiny

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Shiny App
Interactive shiny application to use the R package pophelper interactively

gskdash

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Dash App
gsk data viewer

PK Predictor

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PK Predictor
PK Predictor is an open-source app framework built specifically for predicting human and animal PK parameters

igraph_3D

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Shiny App
3D igraph from tsne with variable genes (Data from Tiklova et al. 2016)

NHP Shiny

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Shiny App
Single cell RNA sequencing dataset associated with the manuscript "Amnion signals are essential for mesoderm formation in primates"

LTS project

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Shiny App
scRNA-seq data in: Small molecule screen identifies a salt-inducible kinase inhibitor inducing β-cell proliferation by transiently activating the unfolded protein response

Natural Nations

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Shiny App
CitizenScience Project

RNA-Seq power

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Shiny App
Power Analysis for RNA-Seq

Gutsy Atlas

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Shiny App
Companion resource to the article, 'An online atlas of human plasma metabolite signatures of gut microbiome composition' by Dekkers et al

ADHD medication among 0-19 year olds in Sweden

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Shiny App
Dashboard plotting the number of people in Sweden aged 0-19 who have have filled a prescription for ADHD medication each year.

Boreal Rhizospheric Atlas

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Shiny App
The Boreal Rhizospheric Atlas online tool was created to encourage exploration of a metatranscriptomic dataset of Norway spruce fine roots and their associated fungal communities from nutrient limited and nutrient enriched forest plots of the boreal region of Northern Sweden.

Adipose Tissue Gene Expression Visualization

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Shiny App
Supplemental interactive visualization of Adipose Tissue Gene expression after exercise. Built using flexdashboard

predguimm

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PredGUI MM
Application allow you to get predictive data about compound (Multiple Molecule)

predgui

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PredGUI
Application allow you to get predictive data about compound (Single Molecule)

NBIS Support 4884

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Shiny App
Byrnes, Lauren E., et al. Lineage dynamics of murine pancreatic development at single-cell resolution

MetaMEx

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Shiny App
Meta-analysis of skeletal muscle response to exercise and inactivity

Acute Myeloid Leukemia API

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Tensorflow Serving
Slimmed down version of the model developed for the Acute Myeloid Leukemia (AML) classification problem by Matek, C., Schwarz, S., Marr, C., & Spiekermann, K. (2019) https://doi.org/10.7937/tcia.2019.36f5o9ld.

Cell Chat

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Shiny App
CellChat's Shiny app which allows interactive exploration of the cell-cell communication that are analyzed by the CellChat R-package

Lab templates

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Shiny App
App for accnr generation

NBIS Support 5860

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Shiny App
Single-cell transcriptomics

Shinycell #6418

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Shiny App
Single Cell Analysis #6418