Public apps

47

Acute Myeloid Leukemia API

Tensorflow Serving

Slimmed down version of the model developed for the Acute Myeloid Leukemia (AML) classification problem by Matek, C., Schwarz, S., Marr, C., & Spiekermann, K. (2019) https://doi.org/10.7937/tcia.2019.36f5o9ld.

Owner:

hamzaimran08@gmail.com

Created On:

08 Dec, 2021

Boreal Rhizospheric Atlas

Shiny App

The Boreal Rhizospheric Atlas online tool was created to encourage exploration of a metatranscriptomic dataset of Norway spruce fine roots and their associated fungal communities from nutrient limited and nutrient enriched forest plots of the boreal region of Northern Sweden.

Owner:

nicolas.delhomme@slu.se

Created On:

23 May, 2022

CoViMAPP

Shiny App

CoViMAPP (CoViD-19 Meta-Analysis of Plasma Proteins) is a meta-analysis resource of plasma proteins' alterations in COVID-19.

Owner:

haris.babacic@ki.se

Created On:

15 Sep, 2023

predguimm

PredGUI MM

Application allow you to get predictive data about compound (Multiple Molecule)

Owner:

hamzaimran08@gmail.com

Created On:

14 Jul, 2023

DRE: Drug Pathway Database

Shiny App

This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

SubCellBarcode BarCode

Shiny App

Single Protein Localization

Owner:

luay.aswad@scilifelab.se

Created On:

29 May, 2023

LTS project

Shiny App

scRNA-seq data in: Small molecule screen identifies a salt-inducible kinase inhibitor inducing β-cell proliferation by transiently activating the unfolded protein response

Owner:

nanjiang.shu@nbis.se

Created On:

17 Feb, 2022

DRE: Syndrome Database

Shiny App

This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

DRE: Gene Set Enrichment Analysis

Shiny App

This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

IFNB scRNA-Seq

Shiny App

IFNB single-cell transcriptomics data

Owner:

roy.francis@nbis.se

Created On:

14 Mar, 2023

MethylR

Shiny Proxy App

A single shiny solution from sequencer data to pathway analysis

Owner:

massimiliano.volpe@liu.se

Created On:

21 Sep, 2023

igraph_3D

Shiny App

3D igraph from tsne with variable genes (Data from Tiklova et al. 2016)

Owner:

nanjiang.shu@nbis.se

Created On:

17 Feb, 2022

Gutsy Atlas

Shiny App

Companion resource to the article, 'An online atlas of human plasma metabolite signatures of gut microbiome composition' by Dekkers et al

Owner:

koen.dekkers@medsci.uu.se

Created On:

16 Aug, 2023

ADHD medication among 0-19 year olds in Sweden

Shiny Proxy App

Dashboard plotting the number of people in Sweden aged 0-19 who have have filled a prescription for ADHD medication each year.

Owner:

arnold.kochari@scilifelab.uu.se

Created On:

25 Sep, 2023

PK Predictor

PK Predictor

PK Predictor is an open-source app framework built specifically for predicting human and animal PK parameters

Owner:

hamzaimran08@gmail.com

Created On:

02 Nov, 2022

DRE: Degenerative Database

Shiny App

This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

Natural Nations

Shiny App

CitizenScience Project

Owner:

nanjiang.shu@nbis.se

Created On:

17 Feb, 2022

Adipose Tissue Gene Expression Visualization

Shiny App

Supplemental interactive visualization of Adipose Tissue Gene expression after exercise. Built using flexdashboard

Owner:

leo.lundell@sund.ku.dk

Created On:

29 Apr, 2022

MetaMEx

Shiny App

Meta-analysis of skeletal muscle response to exercise and inactivity

Owner:

nicolas.pillon@ki.se

Created On:

14 Sep, 2022

DRE: Immune Database

Shiny App

This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

DRE: Drug Set Enrichment Analysis

Shiny App

This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

RNA-Seq Power

Shiny App

Power analysis for RNA-Seq experiment. Estimate number of samples required and more.

Owner:

roy.francis@nbis.se

Created On:

15 Apr, 2023

DRE: Defect Database

Shiny App

This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

DRE: Geneset Similarity Analysis

Shiny App

This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

SubCellBarcode NetWork

Shiny App

Multi Protein Localization

Owner:

luay.aswad@scilifelab.se

Created On:

29 May, 2023

DRE: Other Diseases Database

Shiny App

This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

DRE: Psychiatric Database

Shiny App

This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

SubCellBarcode Download

Shiny App

Data Download

Owner:

luay.aswad@scilifelab.se

Created On:

29 May, 2023

DRE: Atrophy Database

Shiny App

This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

Mouse metabolite atlas

Shiny App

The Mouse Organ Metabolite Atlas

Owner:

tomasz.czuba@med.lu.se

Created On:

24 Mar, 2023

DRE: Cancer Database

Shiny App

This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

NHP Shiny

Shiny App

Single cell RNA sequencing dataset associated with the manuscript "Amnion signals are essential for mesoderm formation in primates"

Owner:

nanjiang.shu@nbis.se

Created On:

17 Feb, 2022

Imminent myocardial infarction prediction model

Shiny Proxy App

Imminent myocardial infarction prediction model. The app is password protected while the publication it belongs to is under review.

Owner:

stefan.gustafsson@medsci.uu.se

Created On:

28 Sep, 2023

Allium

Python Model Deployment

ALLIUM (ALL subtype Identification Using Machine learning) is a multimodal classifier of molecular subtypes in pediatric acute lymphoblastic leukemia, using DNA methylation (DNAm) and gene expression (GEX) data

Owner:

hamzaimran08@gmail.com

Created On:

19 Jun, 2023

predgui

PredGUI

Application allow you to get predictive data about compound (Single Molecule)

Owner:

hamzaimran08@gmail.com

Created On:

12 May, 2022

NBIS Support 4884

Shiny App

Byrnes, Lauren E., et al. Lineage dynamics of murine pancreatic development at single-cell resolution

Owner:

nanjiang.shu@nbis.se

Created On:

17 Feb, 2022

FORALL

Shiny App

Functional Omics Resource of Acute Lymphoblastic Leukemia

Owner:

luay.aswad@scilifelab.se

Created On:

16 Jun, 2023

Drug Repurposing Tool

Shiny App

Drug Repurposing Analysis

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

COVID-19 in Sweden

Dash App

This dashboard visualises the spread of COVID-19 in Sweden: confirmed cases, ICU admissions, and deaths between February 2020 and March 2023.

Owner:

arnold.kochari@scilifelab.uu.se

Created On:

09 May, 2022

SubCellBarcode CoLocal

Shiny App

Correlation Network

Owner:

luay.aswad@scilifelab.se

Created On:

15 Jun, 2023

SubCellBarcode HeatMap

Shiny App

Fractionation Profiles

Owner:

luay.aswad@scilifelab.se

Created On:

29 May, 2023

DRE: Infection Database

Shiny App

This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.

Owner:

lu.pan@ki.se

Created On:

08 Jun, 2023

GPGP-Vc

Shiny App

Shiny app for exploration of the Genome-wide PeptidoGlycan Profiling dataset of Vibrio cholerae mutant library

Owner:

laura.alvarez@umu.se

Created On:

31 May, 2023

Differential Expression Analysis for Suprcellfatory project

Shiny App

Trancriptome analysis for Suprcellfactory project

Owner:

rasools@chalmers.se

Created On:

08 Sep, 2023

TRIDENT

Shiny App

Predicting chemical ecotoxiticy using AI. DOI: https://doi.org/10.1101/2023.04.17.537138

Owner:

skall@student.chalmers.se

Created On:

05 Jun, 2023

OmicLoupe

Shiny App

OmicLoupe server. See https://quantitativeproteomics.org/omicloupe/ for info about OmicLoupe.

Owner:

fredrik.levander@nbis.se

Created On:

30 Dec, 2022

Cell Chat

Shiny App

CellChat's Shiny app which allows interactive exploration of the cell-cell communication that are analyzed by the CellChat R-package

Owner:

christophe.avenel@it.uu.se

Created On:

16 May, 2022