Public apps

47

Acute Myeloid Leukemia API

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Tensorflow Serving
Slimmed down version of the model developed for the Acute Myeloid Leukemia (AML) classification problem by Matek, C., Schwarz, S., Marr, C., & Spiekermann, K. (2019) https://doi.org/10.7937/tcia.2019.36f5o9ld.
Owner:
hamzaimran08@gmail.com
Created On:
08 Dec, 2021

Boreal Rhizospheric Atlas

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Shiny App
The Boreal Rhizospheric Atlas online tool was created to encourage exploration of a metatranscriptomic dataset of Norway spruce fine roots and their associated fungal communities from nutrient limited and nutrient enriched forest plots of the boreal region of Northern Sweden.
Owner:
nicolas.delhomme@slu.se
Created On:
23 May, 2022

CoViMAPP

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Shiny App
CoViMAPP (CoViD-19 Meta-Analysis of Plasma Proteins) is a meta-analysis resource of plasma proteins' alterations in COVID-19.
Owner:
haris.babacic@ki.se
Created On:
15 Sep, 2023

predguimm

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PredGUI MM
Application allow you to get predictive data about compound (Multiple Molecule)
Owner:
hamzaimran08@gmail.com
Created On:
14 Jul, 2023

DRE: Drug Pathway Database

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Shiny App
This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

SubCellBarcode BarCode

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Shiny App
Single Protein Localization
Owner:
luay.aswad@scilifelab.se
Created On:
29 May, 2023

LTS project

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Shiny App
scRNA-seq data in: Small molecule screen identifies a salt-inducible kinase inhibitor inducing β-cell proliferation by transiently activating the unfolded protein response
Owner:
nanjiang.shu@nbis.se
Created On:
17 Feb, 2022

DRE: Syndrome Database

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Shiny App
This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

DRE: Gene Set Enrichment Analysis

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Shiny App
This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

IFNB scRNA-Seq

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Shiny App
IFNB single-cell transcriptomics data
Owner:
roy.francis@nbis.se
Created On:
14 Mar, 2023

MethylR

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Shiny Proxy App
A single shiny solution from sequencer data to pathway analysis
Owner:
massimiliano.volpe@liu.se
Created On:
21 Sep, 2023

igraph_3D

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Shiny App
3D igraph from tsne with variable genes (Data from Tiklova et al. 2016)
Owner:
nanjiang.shu@nbis.se
Created On:
17 Feb, 2022

Gutsy Atlas

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Shiny App
Companion resource to the article, 'An online atlas of human plasma metabolite signatures of gut microbiome composition' by Dekkers et al
Owner:
koen.dekkers@medsci.uu.se
Created On:
16 Aug, 2023

ADHD medication among 0-19 year olds in Sweden

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Shiny Proxy App
Dashboard plotting the number of people in Sweden aged 0-19 who have have filled a prescription for ADHD medication each year.
Owner:
arnold.kochari@scilifelab.uu.se
Created On:
25 Sep, 2023

PK Predictor

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PK Predictor
PK Predictor is an open-source app framework built specifically for predicting human and animal PK parameters
Owner:
hamzaimran08@gmail.com
Created On:
02 Nov, 2022

DRE: Degenerative Database

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Shiny App
This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

Natural Nations

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Shiny App
CitizenScience Project
Owner:
nanjiang.shu@nbis.se
Created On:
17 Feb, 2022

Adipose Tissue Gene Expression Visualization

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Shiny App
Supplemental interactive visualization of Adipose Tissue Gene expression after exercise. Built using flexdashboard
Owner:
leo.lundell@sund.ku.dk
Created On:
29 Apr, 2022

MetaMEx

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Shiny App
Meta-analysis of skeletal muscle response to exercise and inactivity
Owner:
nicolas.pillon@ki.se
Created On:
14 Sep, 2022

DRE: Immune Database

App Logo
Shiny App
This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

DRE: Drug Set Enrichment Analysis

App Logo
Shiny App
This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

RNA-Seq Power

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Shiny App
Power analysis for RNA-Seq experiment. Estimate number of samples required and more.
Owner:
roy.francis@nbis.se
Created On:
15 Apr, 2023

DRE: Defect Database

App Logo
Shiny App
This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

DRE: Geneset Similarity Analysis

App Logo
Shiny App
This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

SubCellBarcode NetWork

App Logo
Shiny App
Multi Protein Localization
Owner:
luay.aswad@scilifelab.se
Created On:
29 May, 2023

DRE: Other Diseases Database

App Logo
Shiny App
This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

DRE: Psychiatric Database

App Logo
Shiny App
This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

SubCellBarcode Download

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Shiny App
Data Download
Owner:
luay.aswad@scilifelab.se
Created On:
29 May, 2023

DRE: Atrophy Database

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Shiny App
This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

Mouse metabolite atlas

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Shiny App
The Mouse Organ Metabolite Atlas
Owner:
tomasz.czuba@med.lu.se
Created On:
24 Mar, 2023

DRE: Cancer Database

App Logo
Shiny App
This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

NHP Shiny

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Shiny App
Single cell RNA sequencing dataset associated with the manuscript "Amnion signals are essential for mesoderm formation in primates"
Owner:
nanjiang.shu@nbis.se
Created On:
17 Feb, 2022

Imminent myocardial infarction prediction model

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Shiny Proxy App
Imminent myocardial infarction prediction model. The app is password protected while the publication it belongs to is under review.
Owner:
stefan.gustafsson@medsci.uu.se
Created On:
28 Sep, 2023

Allium

App Logo
Python Model Deployment
ALLIUM (ALL subtype Identification Using Machine learning) is a multimodal classifier of molecular subtypes in pediatric acute lymphoblastic leukemia, using DNA methylation (DNAm) and gene expression (GEX) data
Owner:
hamzaimran08@gmail.com
Created On:
19 Jun, 2023

predgui

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PredGUI
Application allow you to get predictive data about compound (Single Molecule)
Owner:
hamzaimran08@gmail.com
Created On:
12 May, 2022

NBIS Support 4884

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Shiny App
Byrnes, Lauren E., et al. Lineage dynamics of murine pancreatic development at single-cell resolution
Owner:
nanjiang.shu@nbis.se
Created On:
17 Feb, 2022

FORALL

App Logo
Shiny App
Functional Omics Resource of Acute Lymphoblastic Leukemia
Owner:
luay.aswad@scilifelab.se
Created On:
16 Jun, 2023

Drug Repurposing Tool

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Shiny App
Drug Repurposing Analysis
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

COVID-19 in Sweden

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Dash App
This dashboard visualises the spread of COVID-19 in Sweden: confirmed cases, ICU admissions, and deaths between February 2020 and March 2023.
Owner:
arnold.kochari@scilifelab.uu.se
Created On:
09 May, 2022

SubCellBarcode CoLocal

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Shiny App
Correlation Network
Owner:
luay.aswad@scilifelab.se
Created On:
15 Jun, 2023

SubCellBarcode HeatMap

App Logo
Shiny App
Fractionation Profiles
Owner:
luay.aswad@scilifelab.se
Created On:
29 May, 2023

DRE: Infection Database

App Logo
Shiny App
This app is part of the Drug Repurposing Encyclopedia (DRE), a web server for systematic drug repurposing across 20 organisms. Refer to https://doi.org/10.1101/2023.03.10.532084 for the paper describing the tool.
Owner:
lu.pan@ki.se
Created On:
08 Jun, 2023

GPGP-Vc

App Logo
Shiny App
Shiny app for exploration of the Genome-wide PeptidoGlycan Profiling dataset of Vibrio cholerae mutant library
Owner:
laura.alvarez@umu.se
Created On:
31 May, 2023

Differential Expression Analysis for Suprcellfatory project

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Shiny App
Trancriptome analysis for Suprcellfactory project
Owner:
rasools@chalmers.se
Created On:
08 Sep, 2023

TRIDENT

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Shiny App
Predicting chemical ecotoxiticy using AI. DOI: https://doi.org/10.1101/2023.04.17.537138
Owner:
skall@student.chalmers.se
Created On:
05 Jun, 2023

OmicLoupe

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Shiny App
OmicLoupe server. See https://quantitativeproteomics.org/omicloupe/ for info about OmicLoupe.
Owner:
fredrik.levander@nbis.se
Created On:
30 Dec, 2022

Cell Chat

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Shiny App
CellChat's Shiny app which allows interactive exploration of the cell-cell communication that are analyzed by the CellChat R-package
Owner:
christophe.avenel@it.uu.se
Created On:
16 May, 2022